Publications

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Liang, Lining; Sun, Hao; Zhang, Wei; Zhang, Mengdan; Yang, Xiao; Kuang, Rui; Zheng, Hui (2016): Meta-Analysis of EMT Datasets Reveals Different Types of EMT. . In: PloS one, 11 (6), pp. e0156839–e0156839, 2016. (Type: Journal Article | Abstract | Links | Tags: EMT, Gene Expression, Transcriptome)
Zhang, Wei; Johnson, Nicholas; Wu, Baolin; Kuang, Rui (2012): Signed network propagation for detecting differential gene expressions and DNA copy number variations . In: Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine, pp. 337–344, ACM 2012. (Type: Inproceedings | Abstract | Links | Tags: DNA Copy Number Variation, Gene Expression, Semi-supervised Learning)
Zhang, Wei; Hwang, Baryun; Wu, Baolin; Kuang, Rui (2010): Network propagation models for gene selection . In: 2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), IEEE, 2010, ISBN: 978-1-61284-791-7. (Type: Inproceedings | Abstract | Links | Tags: Cancer Genomics, Gene Expression, Semi-supervised Learning)
Fang, Gang; Kuang, Rui; Pandey, Gaurav; Steinbach, Michael; Myers, Chad; Kumar, Vipin (2010): Subspace differential coexpression analysis: problem definition and a general approach. . In: Pacific symposium on biocomputing, pp. 145–56, 2010. (Type: Inproceedings | Abstract | Links | Tags: Approximate pattern mining, Gene Expression)
Gupta, Rohit; Agrawal, Smita; Rao, Navneet; Tian, Ze; Kuang, Rui; Kumar, Vipin (2009): Integrative Biomarker Discovery for Breast Cancer Metastasis from Gene Expression and Protein Interaction Data Using Error-tolerant Pattern Mining . In: Citeseer, 2009. (Type: Inproceedings | Abstract | Links | Tags: Approximate pattern mining, Cancer Genomics, Gene Expression)
Tian, Ze; Hwang, TaeHyun; Kuang, Rui (2009): A hypergraph-based learning algorithm for classifying gene expression and arrayCGH data with prior knowledge . In: Bioinformatics, 25 (21), pp. 2831–2838, 2009, ISSN: 1460-2059. (Type: Journal Article | Abstract | Links | Tags: DNA Copy Number Variation, Gene Expression, Semi-supervised Learning)
Hwang, TaeHyun; Tian, Ze; Kuang, Rui; Kocher, Jean-Pierre (2008): Learning on weighted hypergraphs to integrate protein interactions and gene expressions for cancer outcome prediction . In: 2008 Eighth IEEE International Conference on Data Mining, pp. 293–302, IEEE 2008, ISBN: 978-0-7695-3502-9. (Type: Inproceedings | Abstract | Links | Tags: Cancer Genomics, Gene Expression, Protein-Protein Interaction Network, Semi-supervised Learning)
Hwang, TaeHyun; Sicotte, Hugues; Tian, Ze; Wu, Baolin; Kocher, Jean-Pierre; Wigle, Dennis; Kumar, Vipin; Kuang, Rui (2008): Robust and efficient identification of biomarkers by classifying features on graphs . In: Bioinformatics, 24 (18), pp. 2023–2029, 2008, ISBN: 1460-2059. (Type: Journal Article | Abstract | Links | Tags: Cancer Genomics, Gene Expression, Semi-supervised Learning)