Publications

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Min, Martin Renqiang; Kuang, Rui; Bonner, Anthony; Zhang, Zhaolei (2009): Learning Random-Walk Kernels for Protein Remote Homology Identification and Motif Discovery. . In: SDM, pp. 133–144, SIAM 2009, ISBN: 978-0-89871-682-5. (Type: Inproceedings | Abstract | Links | Tags: Kernel Method, Protein Remote Homology Detection)
Ngo, Thanh; Kuang, Rui (2009): Partial profile alignment kernels for protein classification . In: 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, pp. 1–4, IEEE 2009, ISBN: 978-1-4244-4761-9. (Type: Inproceedings | Abstract | Links | Tags: Kernel Method, Protein Remote Homology Detection)
Kuang, Rui; Gu, Jianying; Cai, Hong; Wang, Yufeng (2008): Improved prediction of malaria degradomes by supervised learning with SVM and profile kernel . In: Genetica, 136 (1), pp. 189–209, 2008. (Type: Journal Article | Abstract | Links | Tags: Malaria, Protein Remote Homology Detection)
Melvin, Iain; Ie, Eugene; Kuang, Rui; Weston, Jason; Noble, William Stafford; Leslie, Christina (2007): SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition . In: BMC bioinformatics, 8 (4), 2007. (Type: Journal Article | Abstract | Links | Tags: Protein Remote Homology Detection, String Kernels)
Weston, Jason; Kuang, Rui; Leslie, Christina; Noble, William Stafford (2006): Protein ranking by semi-supervised network propagation . In: BMC bioinformatics, 7 (1), pp. 9, 2006. (Type: Journal Article | Abstract | Links | Tags: Protein Remote Homology Detection, Semi-supervised Learning)
Noble, William Stafford; Kuang, Rui; Leslie, Christina; Weston, Jason (2005): Idetifying remote protein homologs by network propagation . In: FEBS J, 272 (20), 2005. (Type: Journal Article | Abstract | Links | Tags: Protein Remote Homology Detection, Semi-supervised Learning)
Kuang, Rui; Weston, Jason; Noble, William Stafford; Leslie, Christina (2005): Motif-based protein ranking by network propagation . In: Bioinformatics, 21 (19), 2005. (Type: Journal Article | Abstract | Links | Tags: Motif, Protein Remote Homology Detection, Semi-supervised Learning)
Leslie, Christina; Kuang, Rui (2004): Fast string kernels using inexact matching for protein sequences . In: Journal of Machine Learning Research, 5 (Nov), 2004. (Type: Journal Article | Abstract | Tags: Protein Remote Homology Detection, String Kernels)
Kuang, Rui; Ie, Eugene; Wang, Ke; Wang, Kai; Siddiqi, Mahira; Freund, Yoav; Leslie, Christina (2004): Profile-based string kernels for remote homology detection and motif extraction . In: Journal of bioinformatics and computational biology, 3 (03), 2004. (Type: Journal Article | Abstract | Links | Tags: Protein Remote Homology Detection, String Kernels)
Kuang, Rui; Ie, Eugene; Wang, Ke; Wang, Kai; Siddiqi, Mahira; Freund, Yoav; Leslie, Christina (2004): Profile-based string kernels for remote homology detection and motif extraction . In: CSB 2004, IEEE, 2004, ISBN: 0-7695-2194-0. (Type: Inproceedings | Abstract | Links | Tags: Protein Remote Homology Detection, String Kernels)
Leslie, Christina; Kuang, Rui; Eskin, Eleazar (2004): Inexact matching string kernels for protein classification . MIT Press, Cambridge, MA, 2004, ISBN: 9780262256926. (Type: Book | Tags: Protein Remote Homology Detection, String Kernels)
Leslie, Christina; Kuang, Rui (2003): Fast kernels for inexact string matching . In: Learning Theory and Kernel Machines, Springer, 2003, ISBN: 978-3-540-45167-9. (Type: Inproceedings | Abstract | Links | Tags: Protein Remote Homology Detection, String Kernels)