Publications

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Johnson, Nicholas; Zhang, Huanan; Fang, Gang; Kumar, Vipin; Kuang, Rui (2015): SubPatCNV: approximate subspace pattern mining for mapping copy-number variations . In: BMC bioinformatics, 16 (1), pp. 1, 2015, ISSN: 1471-2105. (Type: Journal Article | Abstract | Links | Tags: Approximate pattern mining, Cancer Genomics, DNA Copy Number Variation)
Zhang, Huanan; Tian, Ze; Kuang, Rui (2013): Transfer learning across cancers on DNA copy number variation analysis . In: 2013 IEEE 13th International Conference on Data Mining, pp. 1283–1288, IEEE IEEE, 2013, ISBN: 978-0-7695-5108-1. (Type: Inproceedings | Abstract | Links | Tags: Cancer Genomics, DNA Copy Number Variation, Transfer Learning)
Hwang, TaeHyun; Atluri, Gowtham; Kuang, Rui; Kumar, Vipin; Starr, Timothy; Silverstein, Kevin AT; Haverty, Peter; Zhang, Zemin; Liu, Jinfeng (2013): Large-scale integrative network-based analysis identifies common pathways disrupted by copy number alterations across cancers . In: BMC genomics, 14 (1), pp. 440, 2013. (Type: Journal Article | Abstract | Links | Tags: Cancer Genomics, DNA Copy Number Variation, Network-based Learning)
Tian, Ze; Zhang, Huanan; Kuang, Rui (2012): Sparse group selection on fused lasso components for identifying group-specific DNA copy number variations . In: 2012 IEEE 12th International Conference on Data Mining, pp. 665–674, IEEE IEEE, 2012, ISBN: 978-1-4673-4649-8. (Type: Inproceedings | Abstract | Links | Tags: DNA Copy Number Variation, LASSO Model, Sparse Group Learning)
Zhang, Wei; Johnson, Nicholas; Wu, Baolin; Kuang, Rui (2012): Signed network propagation for detecting differential gene expressions and DNA copy number variations . In: Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine, pp. 337–344, ACM 2012. (Type: Inproceedings | Abstract | Links | Tags: DNA Copy Number Variation, Gene Expression, Semi-supervised Learning)
Tian, Ze; Kuang, Rui (2010): Integrative classification and analysis of multiple arrayCGH datasets with probe alignment . In: Bioinformatics, 26 (18), pp. 2313–2320, 2010, ISSN: 1460-2059. (Type: Journal Article | Abstract | Links | Tags: DNA Copy Number Variation, Kernel Method)
Tian, Ze; Hwang, TaeHyun; Kuang, Rui (2009): A hypergraph-based learning algorithm for classifying gene expression and arrayCGH data with prior knowledge . In: Bioinformatics, 25 (21), pp. 2831–2838, 2009, ISSN: 1460-2059. (Type: Journal Article | Abstract | Links | Tags: DNA Copy Number Variation, Gene Expression, Semi-supervised Learning)
Tian, Ze; Hwang, TaeHyun; Kuang, Rui (2009): A hypergraph-based learning algorithm for classifying arraycgh data with spatial prior . In: 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, pp. 1–4, IEEE IEEE, 2009, ISBN: 978-1-4244-4761-9. (Type: Inproceedings | Abstract | Links | Tags: DNA Copy Number Variation, Semi-supervised Learning)