Publications

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Zhang, Wei; Chang, Jae-Woong; Lin, Lilong; Minn, Kay; Wu, Baolin; Chien, Jeremy; Yong, Jeongsik; Zheng, Hui; Kuang, Rui (2015): Network-based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis . In: PLoS Computational Biology, e1004465 , 2015. (Type: Journal Article | Abstract | Links | Tags: Cancer Genomics, Isoform Quantification, Network-based Learning, Protein Domain-Domain Interactions, RNA-Seq)
Hwang, TaeHyun; Atluri, Gowtham; Kuang, Rui; Kumar, Vipin; Starr, Timothy; Silverstein, Kevin AT; Haverty, Peter; Zhang, Zemin; Liu, Jinfeng (2013): Large-scale integrative network-based analysis identifies common pathways disrupted by copy number alterations across cancers . In: BMC genomics, 14 (1), pp. 440, 2013. (Type: Journal Article | Abstract | Links | Tags: Cancer Genomics, DNA Copy Number Variation, Network-based Learning)
Zhang, Wei; Ota, Takayo; Shridhar, Viji; Chien, Jeremy; Wu, Baolin; Kuang, Rui (2013): Network-based survival analysis reveals subnetwork signatures for predicting outcomes of ovarian cancer treatment . In: PLoS Comput Biol, 9 (3), pp. e1002975, 2013. (Type: Journal Article | Abstract | Links | Tags: Cancer Genomics, Network-based Learning, Ovarian Cancer, Survival Analysis, Transcriptome)
Hwang, TaeHyun; Atluri, Gowtham; Xie, MaoQiang; Dey, Sanjoy; Hong, Changjin; Kumar, Vipin; Kuang, Rui (2012): Co-clustering phenome--genome for phenotype classification and disease gene discovery . In: Nucleic acids research, 40 (19), pp. e146–e146, 2012. (Type: Journal Article | Abstract | Links | Tags: Co-clustering, Network-based Learning, Phenome-genome Association, Semi-supervised Learning)