Publications

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Tian, Ze; Kuang, Rui (2012): Global Linear Neighborhoods for Efficient Label Propagation. . In: SDM, pp. 863–872, SIAM 2012, ISBN: 978-1-61197-232-0. (Type: Inproceedings | Abstract | Links | Tags: Lowrank Learning, Semi-supervised Learning)
Cai, Hong; Kuang, Rui; Gu, Jianying; Wang, Yufeng (2011): Proteases in malaria parasites-a phylogenomic perspective . In: Current genomics, 12 (6), pp. 417–427, 2011. (Type: Journal Article | Abstract | Links | Tags: Malaria)
Hwang, TaeHyun; Zhang, Wei; Xie, Maoqiang; Liu, Jinfeng; Kuang, Rui (2011): Inferring disease and gene set associations with rank coherence in networks . In: Bioinformatics, 27 (19), pp. 2692–2699, 2011. (Type: Journal Article | Abstract | Links | Tags: Phenome-genome Association, Semi-supervised Learning)
Jacko, Julie; Johnson, Layne; Adam, Terrence; Ali, Adel; Chan, Daniel; Kuang, Rui; Nelson, Andrew; Watters, Amy; Westra, Bonnie; Fauchald, Sally; others, (2011): Community engagement and outreach as curricular and pedagogical tools for consortial delivery of health informatics curricula . In: International Journal of Information and Operations Management Education, 4 (3-4), pp. 284–308, 2011, ISSN: 1744-2311. (Type: Journal Article | Abstract | Links | Tags: Health Informatics)
Zhang, Wei; Hwang, Baryun; Wu, Baolin; Kuang, Rui (2010): Network propagation models for gene selection . In: 2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), IEEE, 2010, ISBN: 978-1-61284-791-7. (Type: Inproceedings | Abstract | Links | Tags: Cancer Genomics, Gene Expression, Semi-supervised Learning)
Tian, Ze; Kuang, Rui (2010): Integrative classification and analysis of multiple arrayCGH datasets with probe alignment . In: Bioinformatics, 26 (18), pp. 2313–2320, 2010, ISSN: 1460-2059. (Type: Journal Article | Abstract | Links | Tags: DNA Copy Number Variation, Kernel Method)
Hwang, TaeHyun; Kuang, Rui (2010): A Heterogeneous Label Propagation Algorithm for Disease Gene Discovery . In: Society for Industrial and Applied Mathematics. Proceedings of the SIAM International Conference on Data Mining, pp. 583, Society for Industrial and Applied Mathematics 2010. (Type: Inproceedings | Abstract | Links | Tags: Phenome-genome Association, Semi-supervised Learning)
Fang, Gang; Kuang, Rui; Pandey, Gaurav; Steinbach, Michael; Myers, Chad; Kumar, Vipin (2010): Subspace differential coexpression analysis: problem definition and a general approach. . In: Pacific symposium on biocomputing, pp. 145–56, 2010. (Type: Inproceedings | Abstract | Links | Tags: Approximate pattern mining, Gene Expression)
Jacko, Julie; Adam, Terrence; Westra, Bonnie; Witrak, Marty; Berkeland, Ron; Nelson, Andrew; Ali, Adel; Johnson, Layne; Kuang, Rui; LaTour, Kathy; Potthoff, Sandra; Watters, Amy (2010): Launching: university partnership for health informatics . In: Proceedings of the 1st ACM International Health Informatics Symposium, ACM 2010, ISBN: 978-1-4503-0030-8. (Type: Inproceedings | Abstract | Links | Tags: Health Informatics)
Gupta, Rohit; Agrawal, Smita; Rao, Navneet; Tian, Ze; Kuang, Rui; Kumar, Vipin (2009): Integrative Biomarker Discovery for Breast Cancer Metastasis from Gene Expression and Protein Interaction Data Using Error-tolerant Pattern Mining . In: Citeseer, 2009. (Type: Inproceedings | Abstract | Links | Tags: Approximate pattern mining, Cancer Genomics, Gene Expression)
Tian, Ze; Hwang, TaeHyun; Kuang, Rui (2009): A hypergraph-based learning algorithm for classifying gene expression and arrayCGH data with prior knowledge . In: Bioinformatics, 25 (21), pp. 2831–2838, 2009, ISSN: 1460-2059. (Type: Journal Article | Abstract | Links | Tags: DNA Copy Number Variation, Gene Expression, Semi-supervised Learning)
Min, Martin Renqiang; Kuang, Rui; Bonner, Anthony; Zhang, Zhaolei (2009): Learning Random-Walk Kernels for Protein Remote Homology Identification and Motif Discovery. . In: SDM, pp. 133–144, SIAM 2009, ISBN: 978-0-89871-682-5. (Type: Inproceedings | Abstract | Links | Tags: Kernel Method, Protein Remote Homology Detection)
Tian, Ze; Hwang, TaeHyun; Kuang, Rui (2009): A hypergraph-based learning algorithm for classifying arraycgh data with spatial prior . In: 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, pp. 1–4, IEEE IEEE, 2009, ISBN: 978-1-4244-4761-9. (Type: Inproceedings | Abstract | Links | Tags: DNA Copy Number Variation, Semi-supervised Learning)
Ngo, Thanh; Kuang, Rui (2009): Partial profile alignment kernels for protein classification . In: 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, pp. 1–4, IEEE 2009, ISBN: 978-1-4244-4761-9. (Type: Inproceedings | Abstract | Links | Tags: Kernel Method, Protein Remote Homology Detection)
Hwang, TaeHyun; Tian, Ze; Kuang, Rui; Kocher, Jean-Pierre (2008): Learning on weighted hypergraphs to integrate protein interactions and gene expressions for cancer outcome prediction . In: 2008 Eighth IEEE International Conference on Data Mining, pp. 293–302, IEEE 2008, ISBN: 978-0-7695-3502-9. (Type: Inproceedings | Abstract | Links | Tags: Cancer Genomics, Gene Expression, Protein-Protein Interaction Network, Semi-supervised Learning)
Kuang, Rui; Gu, Jianying; Cai, Hong; Wang, Yufeng (2008): Improved prediction of malaria degradomes by supervised learning with SVM and profile kernel . In: Genetica, 136 (1), pp. 189–209, 2008. (Type: Journal Article | Abstract | Links | Tags: Malaria, Protein Remote Homology Detection)
Hwang, TaeHyun; Kuang, Rui (2008): A Comparative Study of Breast Cancer Microarray Gene Expression Profiles using Label Propagation . In: Proceedings of the Workshop on Data Mining for Biomedical Informatics, held in conjunction with SIAM International Conference on Data Mining (SDM), 2008. (Type: Inproceedings | Abstract | Links | Tags: Cancer Genomics, Semi-supervised Learning)
Hwang, TaeHyun; Sicotte, Hugues; Tian, Ze; Wu, Baolin; Kocher, Jean-Pierre; Wigle, Dennis; Kumar, Vipin; Kuang, Rui (2008): Robust and efficient identification of biomarkers by classifying features on graphs . In: Bioinformatics, 24 (18), pp. 2023–2029, 2008, ISBN: 1460-2059. (Type: Journal Article | Abstract | Links | Tags: Cancer Genomics, Gene Expression, Semi-supervised Learning)
Melvin, Iain; Ie, Eugene; Kuang, Rui; Weston, Jason; Noble, William Stafford; Leslie, Christina (2007): SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition . In: BMC bioinformatics, 8 (4), 2007. (Type: Journal Article | Abstract | Links | Tags: Protein Remote Homology Detection, String Kernels)
Weston, Jason; Kuang, Rui; Leslie, Christina; Noble, William Stafford (2006): Protein ranking by semi-supervised network propagation . In: BMC bioinformatics, 7 (1), pp. 9, 2006. (Type: Journal Article | Abstract | Links | Tags: Protein Remote Homology Detection, Semi-supervised Learning)
48 entries « 2 of 3 »